PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504117.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 265aa    MW: 29741.3 Da    PI: 5.5562
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504117.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09134174954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++Le+A++Y+k L
  XP_004504117.1 134 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLEEAIRYVKFL 174
                     699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.977125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12130194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14130194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-10131179No hitNo description
PfamPF000101.2E-6135174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MESNQNNINT SSSFTNVSNN IWNNLEKMET NEQHNNNNII LEDDHHQIPI SSSMIWQNYN  60
MMGAQPPSSS GSLSDILGIH QENHDEEQEE ELGAMKEMMY KIAAMQPVDI DPTTIRKPKR  120
RNVRISDDPQ SVAARHRRER ISEKIRILQR LVPGGTKMDT ASMLEEAIRY VKFLKRQIRL  180
LQSTPQTQQQ QLLPLSQCIS TTSTSAFLLS PSLGCEWPFA PNLLLTSTTT TAELPAGVPF  240
QAGGNSDVHA CDGSSSFNHH EVISE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743081e-171AC174308.7 Medicago truncatula clone mth2-139i23, complete sequence.
GenBankAC1870441e-171AC187044.4 Medicago truncatula clone mth2-135j6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504117.10.0PREDICTED: transcription factor HEC3-like
TrEMBLG7LE061e-119G7LE06_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGGLYMA05G32410.21e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.14e-45bHLH family protein