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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004504117.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 265aa MW: 29741.3 Da PI: 5.5562 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.2 | 3.4e-09 | 134 | 174 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++Le+A++Y+k L XP_004504117.1 134 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLEEAIRYVKFL 174 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.977 | 125 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-12 | 130 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-14 | 130 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-12 | 131 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.19E-10 | 131 | 179 | No hit | No description |
Pfam | PF00010 | 1.2E-6 | 135 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010500 | Biological Process | transmitting tissue development | ||||
GO:0048462 | Biological Process | carpel formation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MESNQNNINT SSSFTNVSNN IWNNLEKMET NEQHNNNNII LEDDHHQIPI SSSMIWQNYN 60 MMGAQPPSSS GSLSDILGIH QENHDEEQEE ELGAMKEMMY KIAAMQPVDI DPTTIRKPKR 120 RNVRISDDPQ SVAARHRRER ISEKIRILQR LVPGGTKMDT ASMLEEAIRY VKFLKRQIRL 180 LQSTPQTQQQ QLLPLSQCIS TTSTSAFLLS PSLGCEWPFA PNLLLTSTTT TAELPAGVPF 240 QAGGNSDVHA CDGSSSFNHH EVISE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC174308 | 1e-171 | AC174308.7 Medicago truncatula clone mth2-139i23, complete sequence. | |||
GenBank | AC187044 | 1e-171 | AC187044.4 Medicago truncatula clone mth2-135j6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004504117.1 | 0.0 | PREDICTED: transcription factor HEC3-like | ||||
TrEMBL | G7LE06 | 1e-119 | G7LE06_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein | ||||
STRING | GLYMA05G32410.2 | 1e-102 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF651 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00120.1 | 4e-45 | bHLH family protein |